The workshop “ML and AI in structural biology: Looking beyond AlphaFold2/RosettaFold for remaining blindspots” will take place from 11/14 to 11/16 at the Institut de Biologie Physico-Chimique in Paris.
The workshop is aiming to regroup experimentalists and theoretical groups to discuss advances but also limitations in the performance and use of those tools. We will in particular explore i) Use in experimental pipelines / integrative structural biology; ii) Membrane proteins; iii) intrinsically disordered proteins/domains; iv) Post-Translational Modifications; v) Oligomers.
The schedule is planned to be organized around two activities:
lectures by invited speakers
interactive exploration of models obtained with alphafold2 and RosettaFold in our visualization room (allowing 3D +/- VR). These events in smaller groups are intended to allow an interdisciplinary dialogue.
invited speakers:
Zoe Cournia (Athens)
Amelie Stein (Copenhagen)
Tatiana Galochkina (U. Paris Cité)
Marc Graille (CNRS/Polytechnique)
Jessica Andreani (CEA)
Thibault Tubiana (I2BC)
Isabelle Callebaut (CNRS/SU)
Program
Monday
Introduction: 9:30-10
session #1 (10-12): Use in experimental pipelines
Amelie Stein (Copenhagen, via zoom)
Marc Graille (CNRS/Polytechnique) “Impact of AlphaFold2/RosettaFold models to solve the phase problem in X-ray crystallography “
session #2 (13h30-15h30): Oligomers
Jessica Andreani (CEA) “AI for the prediction of protein complex structures: overview, examples and perspectives”
Thibault Tubiana (I2BC) “Get to know your protein better with AlphaFold, example with HEV's ORF1.”
Workshop (15h45-17h45):
NOX #1 : Experimentalists: Marie Erard, Oliver Nüsse